fourierCovariance.hpp File Reference

Calculation of the modal covariance in the Fourier basis. More...

Calculation of the modal covariance in the Fourier basis.

Author

Jared R. Males (jared.nosp@m.male.nosp@m.s@gma.nosp@m.il.c.nosp@m.om)

Definition in file fourierCovariance.hpp.

#include <gsl/gsl_integration.h>
#include <gsl/gsl_errno.h>
#include "../../math/constants.hpp"
#include "../../math/func/jinc.hpp"
#include "../../sigproc/fourierModes.hpp"
#include "../../ioutils/fits/fitsFile.hpp"
#include "../../improc/eigenImage.hpp"
#include "../../improc/eigenCube.hpp"
#include "../../mxlib.hpp"
#include "../../ipc/ompLoopWatcher.hpp"
#include "../../sys/timeUtils.hpp"
#include "../../math/eigenLapack.hpp"
#include "../../math/func/airyPattern.hpp"
#include "aoAtmosphere.hpp"
#include "aoPSDs.hpp"
#include "aoSystem.hpp"
#include "varmapToImage.hpp"

Go to the source code of this file.

Classes
struct	mx::AO::analysis::fourierCovariance< realT, aosysT >
	Structure to manage the Fourier mode covariance calculation, passed to integration functions. More...

Namespaces
namespace	mx
	The mxlib c++ namespace.

Macros
#define	WSZ   100000
	The size of the gsl_integration workspaces.

Functions
template<typename realT, typename aosysT>
realT	mx::AO::analysis::phiInt_basic (realT phi, void *params)
	Worker for the azimuthal integral (in phi) for the basic Fourier mode covariance.
template<typename realT, typename aosysT>
realT	mx::AO::analysis::phiInt_mod (realT phi, void *params)
	Worker for the azimuthal integral (in phi) for the modified Fourier mode covariance.
template<typename realT, typename aosysT>
realT	mx::AO::analysis::kInt (realT k, void *params)
	Worker function for the radial integral in the covariance calculation.
template<typename realT, typename aosysT>
int	mx::AO::analysis::fourierVarVec (const std::string &fname, int N, aosysT &aosys, realT absTol, realT relTol, bool modifed=true)
	Calculate a vector of Fourier mode variances.
template<typename realT, typename aosysT>
int	mx::AO::analysis::fourierPSDMap (improc::eigenImage< realT > &var, improc::eigenImage< realT > &psd, int N, int overSample, aosysT &aosys)
	Calculate a map of Fourier variances by convolution with the PSD.
template<typename realT>
int	mx::AO::analysis::fourierCovarMap (const std::string &fname, int N, realT D, realT L_0, bool subPist, bool subTilt, realT absTol, realT relTol, bool modified=true)

Macro Definition Documentation

WSZ

#define WSZ   100000

The size of the gsl_integration workspaces.

Definition at line 44 of file fourierCovariance.hpp.

Referenced by mx::AO::analysis::fourierCovariance< realT, aosysT >::fourierCovariance(), mx::AO::analysis::zernikeTemporalPSD< _realT, aosysT >::zernikeTemporalPSD(), mx::AO::analysis::fourierTemporalPSD< _realT, aosysT >::allocateWorkspace(), mx::AO::analysis::fourierCovariance< realT, aosysT >::getVariance(), mx::AO::analysis::kInt(), mx::AO::analysis::zernikeTemporalPSD< _realT, aosysT >::singleLayerPSD(), and mx::AO::analysis::fourierTemporalPSD< _realT, aosysT >::singleLayerPSDImpl().

Function Documentation

fourierCovarMap()

template<typename realT>

int mx::AO::analysis::fourierCovarMap	(	const std::string &	fname,
		int	N,
		realT	D,
		realT	L_0,
		bool	subPist,
		bool	subTilt,
		realT	absTol,
		realT	relTol,
		bool	modified = true )

Parameters

[out]	fname	the path where the output FITS file will be written
[in]	N	the linear number of Fourier modes across the aperture. The Nyquist frequency is set by N/2.

Definition at line 463 of file fourierCovariance.hpp.

References mx::AO::analysis::fourierCovariance< realT, aosysT >::absTol, mx::AO::analysis::fourierCovariance< realT, aosysT >::aosys, mx::fits::fitsHeader< verboseT >::append(), mx::AO::analysis::aoSystem< _realT, _inputSpectT, iosT >::D(), mx::error, mx::AO::analysis::fourierCovariance< realT, aosysT >::getVariance(), mx::ipc::ompLoopWatcher< _outputT, _printPretty, _printLoops, _printPercent, _printNLine, _time >::incrementAndOutputStatus(), mx::AO::analysis::aoAtmosphere< _realT >::L_0(), mx::AO::analysis::aoSystem< _realT, _inputSpectT, iosT >::loadMagAOX(), mx::AO::analysis::fourierCovariance< realT, aosysT >::m, mx::sigproc::makeFourierModeFreqs_Rect(), mx::AO::analysis::fourierCovariance< realT, aosysT >::mp, mx::AO::analysis::fourierCovariance< realT, aosysT >::n, mx::AO::analysis::fourierCovariance< realT, aosysT >::np, mx::AO::analysis::fourierCovariance< realT, aosysT >::p, mx::AO::analysis::fourierCovariance< realT, aosysT >::pp, mx::AO::analysis::aoAtmosphere< _realT >::r_0(), mx::AO::analysis::fourierCovariance< realT, aosysT >::relTol, mx::AO::analysis::fourierCovariance< realT, aosysT >::useBasic, and mx::fits::fitsFile< dataT, verboseT >::write().

fourierPSDMap()

template<typename realT, typename aosysT>

int mx::AO::analysis::fourierPSDMap	(	improc::eigenImage< realT > &	var,
		improc::eigenImage< realT > &	psd,
		int	N,
		int	overSample,
		aosysT &	aosys )

Calculate a map of Fourier variances by convolution with the PSD.

Uses the Airy pattern for the circularly unobstructed aperture.

Returns

0 on success

-1 on error

Parameters

[out]	var	The variance estimated by convolution with the PSD
[out]	psd	the PSD map
[in]	N	the number of components to analyze
	aosys	[in[ the AO system defining the PSD characteristics.

Definition at line 405 of file fourierCovariance.hpp.

References mx::math::func::airyPattern(), mx::math::two_pi(), and varmapToImage().

fourierVarVec()

template<typename realT, typename aosysT>

int mx::AO::analysis::fourierVarVec	(	const std::string &	fname,
		int	N,
		aosysT &	aosys,
		realT	absTol,
		realT	relTol,
		bool	modifed = true )

Calculate a vector of Fourier mode variances.

Definition at line 321 of file fourierCovariance.hpp.

References mx::AO::analysis::fourierCovariance< realT, aosysT >::absTol, mx::AO::analysis::fourierCovariance< realT, aosysT >::aosys, mx::error, mx::AO::analysis::fourierCovariance< realT, aosysT >::getVariance(), mx::ipc::ompLoopWatcher< _outputT, _printPretty, _printLoops, _printPercent, _printNLine, _time >::incrementAndOutputStatus(), mx::AO::analysis::fourierCovariance< realT, aosysT >::m, mx::AO::analysis::fourierCovariance< realT, aosysT >::mnCon, mx::AO::analysis::fourierCovariance< realT, aosysT >::mp, mx::AO::analysis::fourierCovariance< realT, aosysT >::n, mx::AO::analysis::fourierCovariance< realT, aosysT >::np, mx::AO::analysis::fourierCovariance< realT, aosysT >::p, mx::AO::analysis::fourierCovariance< realT, aosysT >::pp, mx::AO::analysis::fourierCovariance< realT, aosysT >::relTol, and mx::math::two_pi().

kInt()

template<typename realT, typename aosysT>

realT mx::AO::analysis::kInt	(	realT	k,
		void *	params )

Worker function for the radial integral in the covariance calculation.

Parameters

k	the spatial frequency at which to evaluate the integrand
params	a pointer to a object of type fourierCovariance<realT, aosyT>

Template Parameters

realT	a floating point type used for all calculations. As of Nov 2016 must be double due to gsl_integration.
aosysT	the type of the AO system structure

Definition at line 205 of file fourierCovariance.hpp.

References mx::error, mx::AO::analysis::fourierCovariance< realT, aosysT >::k, mx::AO::analysis::fourierCovariance< realT, aosysT >::phi_w, phiInt_basic(), mx::math::two_pi(), mx::AO::analysis::fourierCovariance< realT, aosysT >::useBasic, and WSZ.

phiInt_mod()

template<typename realT, typename aosysT>

realT mx::AO::analysis::phiInt_mod	(	realT	phi,
		void *	params )

Worker for the azimuthal integral (in phi) for the modified Fourier mode covariance.

Parameters

phi	the angle at which to evaluate the integrand
params	a pointer to a object of type fourierCovariance<realT, aosyT>

Template Parameters

realT	a floating point type used for all calculations
aosysT	the type of the AO system structure

Definition at line 127 of file fourierCovariance.hpp.

References mx::AO::analysis::fourierCovariance< realT, aosysT >::aosys, mx::math::func::jinc(), mx::AO::analysis::fourierCovariance< realT, aosysT >::k, mx::AO::analysis::fourierCovariance< realT, aosysT >::m, mx::AO::analysis::fourierCovariance< realT, aosysT >::mnCon, mx::AO::analysis::fourierCovariance< realT, aosysT >::mp, mx::AO::analysis::fourierCovariance< realT, aosysT >::n, mx::AO::analysis::fourierCovariance< realT, aosysT >::np, mx::AO::analysis::fourierCovariance< realT, aosysT >::p, mx::math::pi(), and mx::AO::analysis::fourierCovariance< realT, aosysT >::pp.